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the bioinformatics chat

A podcast about computational biology, bioinformatics, and next generation sequencing.

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#67 AlphaFold and variant effect prediction with Amelie Stein

#67 AlphaFold and variant effect prediction with Amelie Stein

This is the third and final episode in the AlphaFold series, originally recorded on February 23, 2022,with Amelie Stein,... Read more

29 Jul 2023

35mins

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#66 AlphaFold and shape-mers with Janani Durairaj

#66 AlphaFold and shape-mers with Janani Durairaj

This is the second episode in the AlphaFold series, originally recorded on February 14, 2022,with Janani Durairaj, a pos... Read more

10 Jul 2023

20mins

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#65 AlphaFold and protein interactions with Pedro Beltrao

#65 AlphaFold and protein interactions with Pedro Beltrao

In this episode, originally recorded on February 9, 2022,Roman talks to Pedro Beltraoabout AlphaFold, the software devel... Read more

21 Jun 2023

52mins

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#64 Enformer: predicting gene expression from sequence with Žiga Avsec

#64 Enformer: predicting gene expression from sequence with Žiga Avsec

In this episode, Jacob Schreiber interviews Žiga Avsec abouta recently released model, Enformer. Their discussion begins... Read more

9 Nov 2021

59mins

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#63 Bioinformatics Contest 2021 with Maksym Kovalchuk and James Matthew Holt

#63 Bioinformatics Contest 2021 with Maksym Kovalchuk and James Matthew Holt

The Bioinformatics Contest is back this year, and we are back to discussit! This year’s contest winnersMaksym Kovalchuk ... Read more

27 Sep 2021

1hr

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#62 Steady states of metabolic networks and Dingo with Apostolos Chalkis

#62 Steady states of metabolic networks and Dingo with Apostolos Chalkis

In this episode, Apostolos Chalkis presents sampling steadystates of metabolic networks as an alternative to the widely ... Read more

28 Jul 2021

38mins

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#61 3D genome organization and GRiNCH with Da-Inn Erika Lee

#61 3D genome organization and GRiNCH with Da-Inn Erika Lee

In this episode, Jacob Schreiber interviews Da-Inn Erika Lee aboutdata and computational methods for making sense of 3D ... Read more

23 Jun 2021

1hr 9mins

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#60 Differential gene expression and DESeq2 with Michael Love

#60 Differential gene expression and DESeq2 with Michael Love

In this episode, Michael Love joins us to talk about the differential gene expression analysis from bulk RNA-Seq data. W... Read more

12 May 2021

1hr 31mins

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#59 Proteomics calibration with Lindsay Pino

#59 Proteomics calibration with Lindsay Pino

In this episode, Lindsay Pino discusses thechallenges of making quantitative measurements in the field of proteomics.Spe... Read more

21 Apr 2021

48mins

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#58 B cell maturation and class switching with Hamish King

#58 B cell maturation and class switching with Hamish King

In this episode, we learn about B cell maturation and class switching fromHamish King. Hamish recently published apaper ... Read more

31 Mar 2021

1hr 29mins

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