Anita Schürch's guest appearances

Anita Schürch

the bioinformatics chat

David Kelley

Irineo Cabreros

Romain Lopez

Gabriel Misrachi

Hassan Samee

Kristina Grigaityte

Jacob Schreiber

Simeon Carstens

Trevor Pesout

HoJoon Lee

Seung Woo Cho

Kaushik Panda

Keith Slotkin

Fernando Portela

Chang Xu

OwlTail

Does a given bacterial gene live on a plasmid or the chromosome? Whatother genes live on the same plasmid? In this episode, we hear from Sergio Arredondo-Alonso and Anita Schürch, whoseprojects mlplasmids and gplas answer these types of questions. Links:  mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species (Sergio Arredondo-Alonso, Malbert R. C. Rogers, Johanna C. Braat, Tess D. Verschuuren, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch) gplas: a comprehensive tool for plasmid analysis using short-read graphs (Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch)  If you enjoyed this episode, please consider supporting the podcast on Patreon!

Does a given bacterial gene live on a plasmid or the chromosome? What other genes live on the same plasmid? In this episode, we hear from <a href="https://twitter.com/Sergi_Arredondo" rel="nofollow" target="_blank">Sergio Arredondo-Alonso</a> and <a href="https://aschuerch.github.io/" rel="nofollow" target="_blank">Anita Schürch</a>, whose projects <a href="https://gitlab.com/sirarredondo/mlplasmids" rel="nofollow" target="_blank">mlplasmids</a> and <a href="https://gitlab.com/sirarredondo/gplas" rel="nofollow" target="_blank">gplas</a> answer these types of questions. Links: <ul> <li><a href="https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000224" rel="nofollow" target="_blank">mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species</a> (Sergio Arredondo-Alonso, Malbert R. C. Rogers, Johanna C. Braat, Tess D. Verschuuren, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch)</li> <li><a href="https://www.biorxiv.org/content/10.1101/835900v1" rel="nofollow" target="_blank">gplas: a comprehensive tool for plasmid analysis using short-read graphs</a> (Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch)</li> </ul> If you enjoyed this episode, please consider supporting the podcast on <a href="https://www.patreon.com/bioinfochat" rel="nofollow" target="_blank">Patreon</a>!

#40 Plasmid classification and binning with Sergio Arredondo-Alonso and Anita Schürch