Simeon Carstens's guest appearances

Simeon Carstens

the bioinformatics chat

David Kelley

Irineo Cabreros

Romain Lopez

Gabriel Misrachi

Hassan Samee

Kristina Grigaityte

Jacob Schreiber

Trevor Pesout

HoJoon Lee

Seung Woo Cho

Kaushik Panda

Keith Slotkin

Fernando Portela

Chang Xu

Andrey Ziyatdinov

OwlTail

Hi-C is a sequencing-based assay that provides information about the 3-dimensional organization of the genome.In this episode, Simeon Carstens explains how heapplied the Inferential Structure Determination (ISD) framework to build a 3Dmodel of chromatin and fit that model to Hi-C data using Hamiltonian MonteCarlo and Gibbs sampling. Links:  Bayesian inference of chromatin structure ensembles from population Hi-C data (Simeon Carstens, Michael Nilges, Michael Habeck) Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data (Simeon Carstens, Michael Nilges, Michael Habeck)  If you enjoyed this episode, please consider supporting the podcast on Patreon!

Hi-C is a sequencing-based assay that provides information about the 3-dimensional organization of the genome. In this episode, <a href="http://simeon-carstens.com/" rel="nofollow" target="_blank">Simeon Carstens</a> explains how he applied the Inferential Structure Determination (ISD) framework to build a 3D model of chromatin and fit that model to Hi-C data using Hamiltonian Monte Carlo and Gibbs sampling. Links: <ul> <li><a href="https://www.biorxiv.org/content/10.1101/493676v1" rel="nofollow" target="_blank">Bayesian inference of chromatin structure ensembles from population Hi-C data (Simeon Carstens, Michael Nilges, Michael Habeck)</a></li> <li><a href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005292" rel="nofollow" target="_blank">Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data (Simeon Carstens, Michael Nilges, Michael Habeck)</a></li> </ul> If you enjoyed this episode, please consider supporting the podcast on <a href="https://www.patreon.com/bioinfochat" rel="nofollow" target="_blank">Patreon</a>!

#30 Bayesian inference of chromatin structure from Hi-C data with Simeon Carstens