Philip Hugenholtz's guest appearances

Philip Hugenholtz

The Gut Health Gurus Podcast

Ben Greenfield

Hannah Crum

Maya Shetreat

Zach Bush

Jeff Chilton

Sandor Katz

Donna Schwenk

Marvin Singh

Felice Jacka

Cyndi O'Meara

Vincent Pedre

Jack Kruse

Morley Robbins

Jasmina Aganovic

Matt Maruca

OwlTail

We have a groundbreaking discussion with Prof Philip Hugenholtz co-founder of Microba, a company specialising in Metagenomic Stool Testing using DNA based sequencing to analyse the microbiome. We cover the history and application of DNA based sequencing to classify and identify micro-organisms, using the technology to improve health outcomes on a personalised level, the future prospects for precision medicine, IBD, what a healthy microbiome looks like and much more.       Bio:      Professor Hugenholtz is a microbiologist who has made contributions in the field of culture-independent analysis of microorganisms. He discovered and characterised numerous previously unrecognised major bacterial and archaeal lineages each with greater evolutionary divergence than animals and plants combined. He has participated in the development and application of metagenomics, the genome-based characterisation of microbiomes, which has revolutionised our understanding of microbial ecology and evolution. He has made several discoveries in environmental and clinical microbiology sometimes overturning decades of misdirected culture-based studies.     Topics discussed:      Phil’s Origin story   Microbial Classification and Morphology    The Development of DNA based sequencing technology   Carl Woese- 16s rRNA - ribosomal RNA sequencing   https://en.wikipedia.org/wiki/Carl_Woese   Did we evolve from ancient Archaea?   Norm Pace- Application of 16s rRNA sequencing in Ecology    https://en.wikipedia.org/wiki/Norman_R._Pace    Culture indépendant analytical techniques   Craig Venter- Metagenomic Sequencing    https://en.wikipedia.org/wiki/Craig_Venter   Blueprints for identifying bacteria   Development of Sequencing Technology   Discovery of Microbes   Growing Microbes on plates   What is the Greengenes reference database   16s rRNA genes identification vs Whole Genome shotgun sequencing (Metagenomics)   Metagenomics, Big Data and health patterns   The limitation of 16s rRNA technology- conserved genes   Whole Genome Sequencing Resolution   ITS gene and Fungal Classification   Virus and Parasite Classification    The Metagenomic workflow   GTDB Database for Whole-genome sequencing   Predicting IBD, IBS, Crohns   Predicting response to drug response- Depression, Cancer   The Gut Microbiome as an early warning system   The future of Microbiome   What does a healthy cohort’s gut microbiome look like?   Discovery of new species   Faecalibacterium prausnitzii   Anti Inflammatory genes and properties    The uniqueness of the gut microbiome   Characterising IBD   The impact of the immune system   Opportunistic Pathogens- Clostridium difficile, Bilophila wadsworthia, Desulfovibrio, Helicobacter pylori    Gut Metabolite production by microbes- e.g GABA  (a neurotransmitter linked to depression) via KEGG   The future of Gut Microbiome Testing   Metabolomics   Artificial Intelligence and Machine Learning Algorithms for health predictions   Diet as a key driver of the microbiome   Personalised Diet based on a microbiome profile   Prebiotics and Probiotics and Precise Medicine   Fibre and Butyrate Balance   Phil’s top gut health tip   Microbiome changes and improved mental health via diet and exercise         Brought to you by:   Nourishme Organics- The Gut Health Superstore     Check out the Microba Metagenomic Stool Testing and Nutritional Consulting Package for Personalised advice on how to optimise your gut health based on your unique microbiome   https://www.nourishmeorganics.com.au/products/gut-explorer-pro-metagenomic-stool-testing-personalised-nutrition-consultation   Use code guthealthgurus for 10% off         Connect with Prof Phil Hugenholtz   Website- https://www.microba.com/           Connect with Kriben Govender:    Facebook- https://www.facebook.com/kribengee/ Instagram- https://www.instagram.com/kribengovender/ Youtube- https://www.youtube.com/c/Nourishmeorganics?sub_confirmation=1 Gut Health Gurus Facebook Group: https://www.facebook.com/groups/nourishmeorganics/ Deuterium Depletion Support Facebook Group: https://www.facebook.com/groups/347845406055631/    Download links             If you enjoyed this episode and would like to show your support:   1) Please subscribe on Apple Podcasts, give us 5 stars and leave a positive review     Instructions:   - Click this link  https://itunes.apple.com/au/podcast/gut-health-gurus-podcast/id1433882512?mt=2   - Click "View in Itunes" button on the left-hand side - This will open the Itunes app - Click the "Subscribe" button - Click on "Ratings and Reviews" tab - Click on "Write a Review" button    Non-Itunes users can leave a Google Review here: https://goo.gl/9aNP0V      2) Subscribe, like and leave a positive comment on Youtube   https://www.youtube.com/c/Nourishmeorganics?sub_confirmation=1   3) Share your favourite episode on Facebook, Instagram, and Stories 4) Let your friends and family know about this Podcast by email, text, messenger etc   Thank you so much for your support. It means the world to us.

We have a groundbreaking discussion with Prof Philip Hugenholtz co-founder of Microba, a company specialising in Metagenomic Stool Testing using DNA based sequencing to analyse the microbiome. We cover the history and application of DNA based sequencing to classify and identify micro-organisms, using the technology to improve health outcomes on a personalised level, the future prospects for precision medicine, IBD, what a healthy microbiome looks like and much more.       Bio:      Professor Hugenholtz is a microbiologist who has made contributions in the field of culture-independent analysis of microorganisms. He discovered and characterised numerous previously unrecognised major bacterial and archaeal lineages each with greater evolutionary divergence than animals and plants combined. He has participated in the development and application of metagenomics, the genome-based characterisation of microbiomes, which has revolutionised our understanding of microbial ecology and evolution. He has made several discoveries in environmental and clinical microbiology sometimes overturning decades of misdirected culture-based studies.     Topics discussed:    <ul> <li> Phil’s Origin story </li> <li> Microbial Classification and Morphology  </li> <li> The Development of DNA based sequencing technology </li> <li> Carl Woese- 16s rRNA - ribosomal RNA sequencing </li> </ul> <a href="https://en.wikipedia.org/wiki/Carl_Woese" rel="noopener nofollow" target="_blank">https://en.wikipedia.org/wiki/Carl_Woese</a> <ul> <li> Did we evolve from ancient Archaea? </li> <li> Norm Pace- Application of 16s rRNA sequencing in Ecology  </li> </ul> <a href="https://en.wikipedia.org/wiki/Norman_R._Pace" rel="noopener nofollow" target="_blank">https://en.wikipedia.org/wiki/Norman_R._Pace</a> <ul> <li>  Culture indépendant analytical techniques </li> <li> Craig Venter- Metagenomic Sequencing  </li> </ul> <a href="https://en.wikipedia.org/wiki/Craig_Venter" rel="noopener nofollow" target="_blank">https://en.wikipedia.org/wiki/Craig_Venter</a> <ul> <li> Blueprints for identifying bacteria </li> <li> Development of Sequencing Technology </li> <li> Discovery of Microbes </li> <li> Growing Microbes on plates </li> <li> What is the Greengenes reference database </li> <li> 16s rRNA genes identification vs Whole Genome shotgun sequencing (Metagenomics) </li> <li> Metagenomics, Big Data and health patterns </li> <li> The limitation of 16s rRNA technology- conserved genes </li> <li> Whole Genome Sequencing Resolution </li> <li> ITS gene and Fungal Classification </li> <li> Virus and Parasite Classification  </li> <li> The Metagenomic workflow </li> <li> GTDB Database for Whole-genome sequencing </li> <li> Predicting IBD, IBS, Crohns </li> <li> Predicting response to drug response- Depression, Cancer </li> <li> The Gut Microbiome as an early warning system </li> <li> The future of Microbiome </li> <li> What does a healthy cohort’s gut microbiome look like? </li> <li> Discovery of new species </li> <li> Faecalibacterium prausnitzii </li> <li> Anti Inflammatory genes and properties  </li> <li> The uniqueness of the gut microbiome </li> <li> Characterising IBD </li> <li> The impact of the immune system </li> <li> Opportunistic Pathogens- Clostridium difficile, Bilophila wadsworthia, Desulfovibrio, Helicobacter pylori  </li> <li> Gut Metabolite production by microbes- e.g GABA  (a neurotransmitter linked to depression) via KEGG </li> <li> The future of Gut Microbiome Testing </li> <li> Metabolomics </li> <li> Artificial Intelligence and Machine Learning Algorithms for health predictions </li> <li> Diet as a key driver of the microbiome </li> <li> Personalised Diet based on a microbiome profile </li> <li> Prebiotics and Probiotics and Precise Medicine </li> <li> Fibre and Butyrate Balance </li> <li> Phil’s top gut health tip </li> <li> Microbiome changes and improved mental health via diet and exercise  </li> </ul>      Brought to you by:   Nourishme Organics- The Gut Health Superstore     Check out the Microba Metagenomic Stool Testing and Nutritional Consulting Package for Personalised advice on how to optimise your gut health based on your unique microbiome   <a href="https://www.nourishmeorganics.com.au/products/gut-explorer-pro-metagenomic-stool-testing-personalised-nutrition-consultation" rel="noopener nofollow" target="_blank">https://www.nourishmeorganics.com.au/products/gut-explorer-pro-metagenomic-stool-testing-personalised-nutrition-consultation</a>   Use code guthealthgurus for 10% off         Connect with Prof Phil Hugenholtz   Website- <a href="https://www.microba.com/" rel="noopener nofollow" target="_blank">https://www.microba.com/</a>           Connect with Kriben Govender:    Facebook- <a href="https://www.facebook.com/kribengee/" rel="noopener nofollow" target="_blank">https://www.facebook.com/kribengee/</a> Instagram- <a href="https://www.instagram.com/kribengovender/" rel="noopener nofollow" target="_blank">https://www.instagram.com/kribengovender/</a> Youtube- <a href="https://www.youtube.com/c/Nourishmeorganics?sub_confirmation=1" rel="noopener nofollow" target="_blank">https://www.youtube.com/c/Nourishmeorganics?sub_confirmation=1</a> Gut Health Gurus Facebook Group: <a href="https://www.facebook.com/groups/nourishmeorganics/" rel="noopener nofollow" target="_blank">https://www.facebook.com/groups/nourishmeorganics/</a> Deuterium Depletion Support Facebook Group: <a href="https://www.facebook.com/groups/347845406055631/" rel="noopener nofollow" target="_blank">https://www.facebook.com/groups/347845406055631/</a>    Download links   <a href="https://podcasts.apple.com/au/podcast/prof-philip-hugenholtz-on-metagenomic-stool-analysis/id1433882512?i=1000456773313" rel="noopener nofollow" target="_blank"></a><a href="https://open.spotify.com/episode/6yGXeixXyWbBarAgIoT5hE?si=J5nZrt4eQiqKdRVEqMe4_g" rel="noopener nofollow" target="_blank"></a><a href="https://open.spotify.com/episode/6ATyjRWQAKGAz7lWD1g9md?si=ANx3CwK8S_WTWJE7JXY5Qg" rel="nofollow" target="_blank"> </a><a href="https://youtu.be/0dzsD9EIG3Y" rel="noopener nofollow" target="_blank"></a>         If you enjoyed this episode and would like to show your support:   1) Please subscribe on Apple Podcasts, give us 5 stars and leave a positive review     Instructions:   - Click this link  <a href="https://itunes.apple.com/au/podcast/gut-health-gurus-podcast/id1433882512?mt=2" rel="noopener nofollow" target="_blank">https://itunes.apple.com/au/podcast/gut-health-gurus-podcast/id1433882512?mt=2</a>   - Click "View in Itunes" button on the left-hand side - This will open the Itunes app - Click the "Subscribe" button - Click on "Ratings and Reviews" tab - Click on "Write a Review" button    Non-Itunes users can leave a Google Review here: <a href="https://goo.gl/9aNP0V" rel="noopener nofollow" target="_blank">https://goo.gl/9aNP0V</a>      2) Subscribe, like and leave a positive comment on Youtube   <a href="https://www.youtube.com/c/Nourishmeorganics?sub_confirmation=1" rel="noopener nofollow" target="_blank">https://www.youtube.com/c/Nourishmeorganics?sub_confirmation=1</a>   3) Share your favourite episode on Facebook, Instagram, and Stories 4) Let your friends and family know about this Podcast by email, text, messenger etc   Thank you so much for your support. It means the world to us.

Prof Philip Hugenholtz on Metagenomic Stool Analysis for Optimal Gut Health